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1

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic

Diehl, William E., Lin, Aaron E., Grubaugh, Nathan D., Carvalho, Luiz Max, Kim, Kyusik, Kyawe, Pyae Phyo, McCauley, Sean M., Donnard, Elisa, Kucukural, Alper, McDonel, Patrick, Schaffner, Stephen F.,

Journal:

Year:

2016

Language:

english

File:

PDF, 3.32 MB

english, 2016

2

At the Borders of Public and Private: The Oturmalar of Kayseri

Cengiz, Kurtuluş, Küçükural, Önder, Shkreli, Etrit

Journal:

The Middle East Journal

Year:

2015

Language:

english

File:

PDF, 282 KB

english, 2015

3

Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

Min, So Yun, Desai, Anand, Yang, Zinger, Sharma, Agastya, DeSouza, Tiffany, Genga, Ryan M. J., Kucukural, Alper, Lifshitz, Lawrence M., Nielsen, Søren, Scheele, Camilla, Maehr, René, Garber, Manuel, C

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 3.08 MB

english, 2019

4

A Translational Model for Venous Thromboembolism: MicroRNA Expression in Hibernating Black Bears

Fazzalari, Amanda, Basadonna, Giacomo, Kucukural, Alper, Tanriverdi, Kahraman, Koupenova, Milka, Pozzi, Natalie, Kakuturu, Jahnavi, Friedrich, Ann-Kristin U., Korstanje, Ron, Fowler, Nicholas, Belant,

Journal:

Journal of Surgical Research

Year:

2021

File:

PDF, 865 KB

2021

5

I-TASSER: a unified platform for automated protein structure and function prediction

Roy, Ambrish, Kucukural, Alper, Zhang, Yang

Journal:

Nature Protocols

Year:

2010

Language:

english

File:

PDF, 1.85 MB

english, 2010

6

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon

Donnard, Elisa, Vangala, Pranitha, Afik, Shaked, McCauley, Sean, Nowosielska, Anetta, Kucukural, Alper, Tabak, Barbara, Zhu, Xiaopeng, Diehl, William, McDonel, Patrick, Yosef, Nir, Luban, Jeremy, Garb

Journal:

Year:

2018

Language:

english

File:

PDF, 10.58 MB

english, 2018

7

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

Kucukural, A., Ozadam, H., Singh, G., Moore, M. J., Cenik, C.

Journal:

Year:

2013

Language:

english

File:

PDF, 111 KB

english, 2013

8

Comparison of RNA Isolation and Associated Methods for Extracellular RNA Detection by High-Throughput qPCR

Tanriverdi, Kahraman, Kucukural, Alper, Mikhalev, Ekaterina, Tanriverdi, Selim E., Lee, Rosalind, Ambros, Victor R., Freedman, Jane E.

Journal:

Analytical Biochemistry

Year:

2016

Language:

english

File:

PDF, 2.47 MB

english, 2016

9

Discrimination of proteins using graph theoretic properties

Alper Küçükural, O Ugur Sezerman

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 186 KB

english, 2007

10

Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

Min, So Yun, Desai, Anand, Yang, Zinger, Sharma, Agastya, DeSouza, Tiffany, Genga, Ryan M. J., Kucukural, Alper, Lifshitz, Lawrence M., Nielsen, Søren, Scheele, Camilla, Maehr, René, Garber, Manuel, C

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 3.08 MB

2019

11

Genomic Characterization of Endothelial Enhancers Reveals a Multifunctional Role for NR2F2 in Regulation of Arteriovenous Gene Expression

Sissaoui, Samir, Yu, Jun, Yan, Aimin, Li, Rui, Zhu, Lihua J, Kucukural, Alper, Yukselen, Onur, Lawson, Nathan D

Journal:

Circulation Research

Year:

2020

File:

PDF, 1.02 MB

2020

12

Novel Observations from Next Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets

Blodgett, David M., Nowosielska, Anetta, Afik, Shaked, Pechhold, Susanne, Cura, Anthony J., Kennedy, Norman J., Kim, Soyoung, Kucukural, Alper, Davis, Roger J., Kent, Sally C., Greiner, Dale L., Garbe

Journal:

Year:

2015

Language:

english

File:

PDF, 9.22 MB

english, 2015

13

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus

Singh, Guramrit, Kucukural, Alper, Cenik, Can, Leszyk, John D., Shaffer, Scott A., Weng, Zhiping, Moore, Melissa J.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.19 MB

english, 2012

14

Generation and Analysis of Expressed Sequence Tags from Olea europaea L.

Ozdemir Ozgenturk, Nehir, Oruç, Fatma, Sezerman, Ugur, Kuçukural, Alper, Vural Korkut, Senay, Toksoz, Feriha, Un, Cemal

Journal:

Comparative and Functional Genomics

Year:

2010

Language:

english

File:

PDF, 246 KB

english, 2010

15

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome

Shea, Jeremy M., Serra, Ryan W., Carone, Benjamin R., Shulha, Hennady P., Kucukural, Alper, Ziller, Michael J., Vallaster, Markus P., Gu, Hongcang, Tapper, Andrew R., Gardner, Paul D., Meissner, Alexa

Journal:

Developmental Cell

Year:

2015

Language:

english

File:

PDF, 2.52 MB

english, 2015

16

DEBrowser: interactive differential expression analysis and visualization tool for count data

Kucukural, Alper, Yukselen, Onur, Ozata, Deniz M., Moore, Melissa J., Garber, Manuel

Journal:

Year:

2019

File:

PDF, 5.87 MB

2019

17

Simultaneous generation of many RNA-seq libraries in a single reaction

Shishkin, Alexander A, Giannoukos, Georgia, Kucukural, Alper, Ciulla, Dawn, Busby, Michele, Surka, Christine, Chen, Jenny, Bhattacharyya, Roby P, Rudy, Robert F, Patel, Milesh M, Novod, Nathaniel, Hun

Journal:

Year:

2015

Language:

english

File:

PDF, 499 KB

english, 2015

18

Staufen1 senses overall transcript secondary structure to regulate translation

Ricci, Emiliano P, Kucukural, Alper, Cenik, Can, Mercier, Blandine C, Singh, Guramrit, Heyer, Erin E, Ashar-Patel, Ami, Peng, Lingtao, Moore, Melissa J

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.99 MB

english, 2013

19

Reduced Neurog3 Gene Dosage Shifts Enteroendocrine Progenitor Toward Goblet Cell Lineage in the Mouse Intestine

Li, Hui Joyce, Ray, Subir K., Kucukural, Alper, Gradwohl, Gerard, Leiter, Andrew B.

Journal:

CMGH Cellular and Molecular Gastroenterology and Hepatology

Year:

2020

File:

PDF, 5.47 MB

2020

20

Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes

Sephton, C. F., Cenik, C., Kucukural, A., Dammer, E. B., Cenik, B., Han, Y., Dewey, C. M., Roth, F. P., Herz, J., Peng, J., Moore, M. J., Yu, G.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 5.06 MB

english, 2011

21

CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling

Mou, Haiwei, Ozata, Deniz M., Smith, Jordan L., Sheel, Ankur, Kwan, Suet-Yan, Hough, Soren, Kucukural, Alper, Kennedy, Zachary, Cao, Yueying, Xue, Wen

Journal:

Genome Medicine

Year:

2019

File:

PDF, 2.27 MB

2019

22

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases

Zhu, Lihua Julie, Lawrence, Michael, Gupta, Ankit, Pagès, Hervé, Kucukural, Alper, Garber, Manuel, Wolfe, Scot A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.75 MB

english, 2017

23

DolphinNext: a distributed data processing platform for high throughput genomics

Yukselen, Onur, Turkyilmaz, Osman, Ozturk, Ahmet Rasit, Garber, Manuel, Kucukural, Alper

Journal:

Year:

2020

File:

PDF, 1.74 MB

2020

24

Platelet functional and transcriptional changes induced by intralipid infusion

Beaulieu, Lea, Vitseva, Olga, Tanriverdi, Kahraman, Kucukural, Alper, Mick, Eric, Hamburg, Naomi, Vita, Joseph, Freedman, Jane

Journal:

Thrombosis and Haemostasis

Year:

2016

Language:

english

File:

PDF, 250 KB

english, 2016

25

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus

Singh, Guramrit, Kucukural, Alper, Cenik, Can, Leszyk, John D., Shaffer, Scott A., Weng, Zhiping, Moore, Melissa J.

Journal:

Year:

2012

Language:

english

File:

PDF, 333 KB

english, 2012

26

Recovery of viable endocrineâspecific cells and transcriptomes from human pancreatic isletâengrafted mice

Redick, Sambra D., Leehy, Linda, Rittenhouse, Ann R., Blodgett, David M., Derr, Alan G., Kucukural, Alper, Garber, Manuel G., Shultz, Leonard D., Greiner, Dale L., Wang, Jennifer P., Harlan, David M.,

Journal:

The FASEB Journal

Year:

2020

File:

PDF, 996 KB

2020

27

CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling

Mou, Haiwei, Ozata, Deniz M., Smith, Jordan L., Sheel, Ankur, Kwan, Suet-Yan, Hough, Soren, Kucukural, Alper, Kennedy, Zachary, Cao, Yueying, Xue, Wen

Journal:

Genome Medicine

Year:

2019

Language:

english

File:

PDF, 2.27 MB

english, 2019

28

[ACM Press the 9th annual conference - London, England (2007.07.07-2007.07.11)] Proceedings of the 9th annual conference on Genetic and evolutionary computation - GECCO '07 - Evolutionary selection of minimum number of features for classification of gene expression data using genetic algorithms

Küçükural, Alper, Yeniterzi, Reyyan, Yeniterzi, Süveyda, Sezerman, O. Uğur

Year:

2007

Language:

english

File:

PDF, 233 KB

english, 2007

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